Author

A. K. Pontinen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:chromatin & epigenetic regulation· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

G. Tonkin-Hill· 2 shared J. Corander· 2 shared R. A. Gladstone· 2 shared S. Arredondo-Alonso· 2 shared G. S. Simonsen· 1 shared H. A. Thorpe· 1 shared J. Gama· 1 shared K. Harms· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

G. Tonkin-Hill

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Plasmid-driven strategies for clone success in Escherichia coli

S. Arredondo-Alonso, A. K. Pontinen, J. Gama, R. A. Gladstone, K. Harms, G. Tonkin-Hill, H. A. Thorpe, G. S. Simonsen, O. Samuelsen, P. J. Johnsen, J. Corander

The paper uses long-read sequencing to analyze plasmids and chromosomes in E. coli over two decades, revealing long-term plasmid-lineage associations and success strategies.

bioRxiv · Oct 14, 2023 · PreprintMicrobiology

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

G. Tonkin-Hill, R. A. Gladstone, A. K. Pontinen, S. Arredondo-Alonso, S. D. Bentley, J. Corander

The paper introduces Panstripe, a method to robustly analyze gene gain and loss rates in prokaryotic pangenomes, accounting for sampling bias and annotation errors.

bioRxiv · Apr 23, 2022Evolutionary Biology