Author

A. Spreafico

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

B. Chen· 2 shared A. A. HEIRALI· 1 shared A. A. N. Rose· 1 shared B. A. Coburn· 1 shared B. Coburn· 1 shared D. W. Cescon· 1 shared E. Rousselle· 1 shared G. Batist· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

B. Chen

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Author profile →

3 papers

Recent·Most cited

The clinical, genomic, and transcriptomic landscape of BRAF mutant cancers

S. Kazandjian, E. Rousselle, M. Dankner, D. W. Cescon, A. Spreafico, K. Ma, P. Kavan, G. Batist, A. A. N. Rose

This paper analyzes the clinical, genomic, and transcriptomic features of BRAF mutant cancers across multiple tumor types and identifies demographic and molecular differences between BRAF mutation classes.

bioRxiv · Sep 15, 2023Cancer Biology

Mega- and meta-analyses of fecal metagenomic studies assessing response to immune checkpoint inhibitors

A. A. HEIRALI, B. Chen, M. Wong, P. Schneeberger, V. Rey, A. Spreafico, W. Xu, B. A. Coburn

The paper performs meta- and mega-analyses of fecal metagenomic data from four cohorts to identify bacterial species associated with response to immune checkpoint inhibitors.

bioRxiv · Apr 27, 2021 · PreprintMicrobiology

Two-target quantitative PCR to predict library composition for shallow shotgun sequencing

M. Y. Cho, M. Oliva, A. Spreafico, B. Chen, X. Wei, Y. Choi, R. Kaul, L. L. Siu, B. Coburn, P. H. H. Schneeberger

The paper develops a two-target qPCR assay to predict human-to-microbe ratios in samples, enabling better planning of shotgun sequencing experiments.

bioRxiv · Sep 21, 2020Microbiology