Author

M. Oliva

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Research Focus:cell type annotation· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:trajectory inference· 2 Organism:bacteria (other)· 1

Frequent Co-Authors

R. Lister· 3 shared J. Whelan· 2 shared M. G. Lewsey· 2 shared T. Stuart· 2 shared A. Haslem· 1 shared A. Spreafico· 1 shared B. Chen· 1 shared B. Coburn· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersPlant Biology

R. Lister

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Author profile →

4 papers

Recent·Most cited

Establishment of cell transcriptional identity during seed germination

L. C. Liew, Y. You, M. Oliva, M. Peirats-Llobet, S. Ng, M. Tamiru-Oli, O. G. Berkowitz, U. V. T. Hong, A. Haslem, T. Stuart, M. E. Ritchie, G. Bassel, R. Lister, J. Whelan, Q. Gouil, M. G. Lewsey

This study maps the temporal changes in cell-type specific gene expression during Arabidopsis seed germination, revealing a shared initial transcriptional state followed by distinct regulatory programs.

bioRxiv · Jan 21, 2023 · PreprintPlant Biology

PHYTOMap: Multiplexed single-cell 3D spatial gene expression analysis in plant tissue

T. Nobori, M. Oliva, R. Lister, J. R. Ecker

PHYTOMap enables low-cost, transgene-free single-cell spatial gene expression analysis in plant tissue, demonstrating its ability to identify cell types in Arabidopsis roots.

bioRxiv · Jul 28, 2022 · PreprintPlant Biology

An environmentally responsive transcriptional state modulates cell identities during root development

M. Oliva, T. Stuart, D. Tang, J. Pflueger, D. Poppe, J. S. Jabbari, S. Gigante, J. M. Dragwidge, J. Whelan, M. G. Lewsey, R. Lister

This study identifies an environmentally responsive transcriptional state that influences cell identities during root development in Arabidopsis, revealing a new layer of patterning independent of ontogenetic trajectories.

bioRxiv · Mar 4, 2022 · PreprintPlant Biology

Two-target quantitative PCR to predict library composition for shallow shotgun sequencing

M. Y. Cho, M. Oliva, A. Spreafico, B. Chen, X. Wei, Y. Choi, R. Kaul, L. L. Siu, B. Coburn, P. H. H. Schneeberger

The paper develops a two-target qPCR assay to predict human-to-microbe ratios in samples, enabling better planning of shotgun sequencing experiments.

bioRxiv · Sep 21, 2020Microbiology