Author

Alexa Mallar

Whitehead Institute for Biomedical Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Ana Karla Cepeda DiaziD· 1 shared Andrew Nutter-Upham· 1 shared Iain M. CheesemaniD· 1 shared Matteo Di BernardoiD· 1 shared Paul C. BlaineyiD· 1 shared Roshan KerniD· 1 shared Samuel J. Choi· 1 shared Sebastian LouridoiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperCell Biology

Ana Karla Cepeda DiazORCID

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Author profile →

1 paper

Recent·Most cited

Brieflow: An Integrated Computational Pipeline for High-Throughput Analysis of Optical Pooled Screening Data

Matteo Di Bernardo, Roshan Kern, Ana Karla Cepeda Diaz, Alexa Mallar, Samuel J. Choi, Andrew Nutter-Upham, Sebastian Lourido, Paul C. Blainey, Iain M. Cheeseman

Brieflow is a computational pipeline for analyzing optical pooled screening data, demonstrating its ability to recover biological modules missed by existing methods.

Nature Communications · May 30, 2026Peer-reviewedCell Biology