Author

Alon Katz

University of Maryland, College Park

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 1 Research Focus:perturbation response prediction· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Bharath Kumar SwargamiD· 1 shared Bicna SongiD· 1 shared Danwei HuangfuiD· 1 shared Dingyu LiuiD· 1 shared Gary Hon· 1 shared Hanrui ZhangiD· 1 shared Huan ZhaoiD· 1 shared Jiahui Hazel Zhao· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Bharath Kumar SwargamORCID

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1 paper

Recent·Most cited

pertTF: context-aware AI modeling for genome-scale and cross-system perturbation prediction

Yangqi Su, Dingyu Liu, Vipin K. Menon, Bicna Song, Samuel Boccara, Nan Zhang, Huan Zhao, Jiahui Hazel Zhao, Lei Wang, Nan Hu, Mpathi Nzima, Alon Katz, Bharath Kumar Swargam, Seth A. Ament, Yarui Diao, , Wei Li

The paper introduces pertTF, a transformer-based model for predicting genetic perturbation responses, showing improved performance in expression prediction and cell identity shifts across cellular contexts.

bioRxiv · Mar 16, 2026 · PreprintBioinformatics