Author

Angie L. Bookout

Novo Nordisk (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:mouse· 2 Assay:proteomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alan SaghatelianiD· 2 shared Christopher A. BarnesiD· 2 shared Cristiano Valim BizarroiD· 2 shared Eduardo Vieira de SouzaiD· 2 shared Aaron J. MerceriD· 1 shared Alex Simon· 1 shared Anastasiya V. KulikovaiD· 1 shared Andrew J. WhittleiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Alan SaghatelianORCID

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Author profile →

3 papers

Recent·Most cited

Sparse autoencoder features from InterPLM predict neuropeptide precursors among secreted proteins

Anastasiya V. Kulikova, Angie L. Bookout, Thomas Lund Koch, Helena Safavi-Hemami

The paper introduces a method using sparse autoencoder features from InterPLM to predict neuropeptide precursors from secreted proteins across species.

bioRxiv · Aug 23, 2026 · PreprintBioinformatics

The Integration of Proteogenomics and Ribosome Profiling Circumvents Key Limitations to Increase the Coverage and Confidence of Novel Microproteins

Eduardo Vieira de Souza, Angie L. Bookout, Christopher A. Barnes, Brendan Miller, Pablo Machado, Luiz Augusto Basso, Cristiano Valim Bizarro, Alan Saghatelian

This paper introduces RP3, a pipeline combining proteogenomics and ribosome profiling to identify microprotein-encoding smORFs missed by Ribo-Seq alone, improving detection and confidence.

Nature Communications · Aug 9, 2024Peer-reviewedBioinformatics

Profiling Mouse Brown and White Adipocytes to Identify Metabolically Relevant Small ORFs and Functional Microproteins

Thomas Farid Martinez, Sally Lyons‐Abbott, Angie L. Bookout, Eduardo Vieira de Souza, Cynthia J. Donaldson, Joan M. Vaughan, Calvin J. Lau, Ariel Abramov, Arian F. Baquero, Karalee C. Baquero, Dave Friedrich, Justin N. Huard, Ray Davis, Bong-Chul Kim, Ty Koch, , Christopher A. Barnes

The paper identifies and characterizes small ORFs and microproteins in adipose cells, showing their metabolic relevance and potential roles in obesity and inflammation.

Cell Metabolism · Jan 1, 2023Peer-reviewedSystems Biology