Author

Anthony Bolger

RWTH Aachen University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Organism:Arabidopsis· 2 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:genome assembly· 2 Research Focus:software / tool· 2 Approach:statistical model· 2

Frequent Co-Authors

Alisandra K. DentoniD· 3 shared Björn UsadeliD· 3 shared Marie BolgeriD· 3 shared Alexander VogeliD· 2 shared Janina MaßiD· 2 shared Maximilian SchmidtiD· 2 shared Alexandra WormitiD· 1 shared Alisdair R. Fernie· 1 shared

Activity by Year

2017-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Alisandra K. DentonORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Helixer--de novo Prediction of Primary Eukaryotic Gene Models Combining Deep Learning and a Hidden Markov Model

Felix Holst, Anthony Bolger, Felicitas Kindel, Christopher Günther, Janina Maß, Sebastian ST Triesch, Niklas Kiel, Nima P. Saadat, Oliver Ebenhöh, Björn Usadel, Rainer Schwacke, Andreas P.M. Weber, Marie Bolger, Alisandra K. Denton

Helixer, a hybrid convolutional/bLSTM network with a hidden Markov model post-processor, predicts eukaryotic primary gene models from DNA alone, outscoring GenemarkES and AUGUSTUS on most species.

Nature Methods · Nov 24, 2025Peer-reviewedBioinformatics✦ In-depth digest

The genome and metabolome of the tobacco tree, Nicotiana glauca: a potential renewable feedstock for the bioeconomy

Björn Usade, Takayuki Tohge, Federico Scossa, Nicolas Sierro, Maximilian Schmidt, Alexander Vogel, Anthony Bolger, Amanda Kozlo, Eugenia MA Enfissi, Kris Morrel, Manuel Regenauer, Asis Hallab, Colin Ruprecht, Heidrun Gundlach, Manuel Spannagl, , Alisdair R. Fernie

The paper presents the draft genome and transcriptome of Nicotiana glauca, along with metabolome analysis, providing a resource for studying secondary metabolites and phylogenetics in tobacco species.

bioRxiv · Jun 20, 2018 · PreprintPlant Biology

Reconstructing The Gigabase Plant Genome Of Solanum pennellii Using Nanopore Sequencing

Maximilian Schmidt, Alexander Vogel, Alisandra K. Denton, Benjamin Istace, Alexandra Wormit, Henri van de Geest, Marie Bolger, Saleh Alseekh, Janina Maß, Christian Pfaff, Ulrich Schurr, Roger T. Chetelat, Florian Maumus, Jean‐Marc Aury, Sergey Koren, , Björn Usadel

The paper uses nanopore sequencing to assemble a high-quality genome of Solanum pennellii, achieving high gene completeness and structural similarity to a reference genome.

The Plant Cell · Oct 1, 2017Peer-reviewedGenomics

LOGAN: A framework for LOssless Graph-based ANalysis of high throughput sequence data

Anthony Bolger, Alisandra K. Denton, Marie Bolger, Björn Usadel

The paper introduces LOGAN, a memory-efficient, lossless data structure for sequence analysis, capable of handling large genomic datasets from multiple organisms.

bioRxiv · Aug 21, 2017 · PreprintBioinformatics