Marie Bolger

Helixer, a hybrid convolutional/bLSTM network with a hidden Markov model post-processor, predicts eukaryotic primary gene models from DNA alone, outscoring GenemarkES and AUGUSTUS on most species.

This study identifies a Chinese yam FT homolog, DpFT3a, that induces tuber formation in potato, suggesting its role in storage organ development.

PubPlant catalogs over 1800 sequenced plant genomes, offering visualizations and phylogenetic insights, and highlights gaps in food crop genome sequencing.

This paper presents a chromosome-scale genome assembly for Solanum lycopersicoides and maps introgression lines to support genetic studies of traits in tomato.

The paper uses nanopore sequencing to assemble a high-quality genome of Solanum pennellii, achieving high gene completeness and structural similarity to a reference genome.

The paper introduces LOGAN, a memory-efficient, lossless data structure for sequence analysis, capable of handling large genomic datasets from multiple organisms.