Author

Janina Maß

Forschungszentrum JülichORCID 0000-0002-0752-7732Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Alisandra K. DentoniD· 2 shared Anthony Bolger· 2 shared Björn UsadeliD· 2 shared Marie BolgeriD· 2 shared Alexander VogeliD· 1 shared Alexandra WormitiD· 1 shared Alisdair Robert FernieiD· 1 shared Andreas P.M. WeberiD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersBioinformatics

Alisandra K. DentonORCID

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2 papers

Recent·Most cited

Helixer--de novo Prediction of Primary Eukaryotic Gene Models Combining Deep Learning and a Hidden Markov Model

Felix Holst, Anthony Bolger, Felicitas Kindel, Christopher Günther, Janina Maß, Sebastian ST Triesch, Niklas Kiel, Nima P. Saadat, Oliver Ebenhöh, Björn Usadel, Rainer Schwacke, Andreas P.M. Weber, Marie Bolger, Alisandra K. Denton

Helixer, a hybrid convolutional/bLSTM network with a hidden Markov model post-processor, predicts eukaryotic primary gene models from DNA alone, outscoring GenemarkES and AUGUSTUS on most species.

Nature Methods · Nov 24, 2025Peer-reviewedBioinformatics✦ In-depth digest

Reconstructing The Gigabase Plant Genome Of Solanum pennellii Using Nanopore Sequencing

Maximilian Schmidt, Alexander Vogel, Alisandra K. Denton, Benjamin Istace, Alexandra Wormit, Henri van de Geest, Marie Bolger, Saleh Alseekh, Janina Maß, Christian Pfaff, Ulrich Schurr, Roger T. Chetelat, Florian Maumus, Jean‐Marc Aury, Sergey Koren, , Björn Usadel

The paper uses nanopore sequencing to assemble a high-quality genome of Solanum pennellii, achieving high gene completeness and structural similarity to a reference genome.

The Plant Cell · Oct 1, 2017Peer-reviewedGenomics