Author

Aonkon Dey

Center for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Boston, MA; Krantz Family Center for Cancer Research, Massachusetts General Hospital, Boston, MA; Broad Institute of Massachusetts Institute of Technology and Harvard, Cambri;Primary ORCID profile (0000-0002-8576-6771 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Aonkon DeyiD1 paper · Broad Institute

Biology Disciplines

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Bioengineering· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:imaging· 1 Research Focus:metabolism & bioenergetics· 1 Approach:microscopy & imaging analysis· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Alexandra-Chloe Villani· 1 shared Alice Tirard· 1 shared Amir T. Fathi· 1 shared Andrew M. Brunner· 1 shared Ash Sze· 1 shared Benjamin Arnold· 1 shared David Lee KaplaniD· 1 shared Eric L. MilleriD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperCancer Biology

Alexandra-Chloe Villani

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Author profile →

2 papers

Recent·Most cited

Response to azacitidine and the TIM-3 inhibitor, sabatolimab, in MDS and CMML is associated with distinct immune and antigen-presentation states

Aonkon Dey, Neal Smith, Alice Tirard, Benjamin Arnold, Thomas Chan, Jennifer Lombardi-Story, Timothy Casson, Tanya T. Behnan, Sergio Aguilar-Fernandez, Amir T. Fathi, Gabriela S. Hobbs, Hanno Hock, Philip C. Amrein, Patrick Reeves, Max Jan, , Alexandra-Chloe Villani

This study identifies immune and antigen-presentation states associated with response to azacitidine and sabatolimab in MDS and CMML using single-cell RNA sequencing.

bioRxiv · Nov 5, 2026 · PreprintCancer Biology

Multi-modal, Label-free, Optical Mapping of Cellular Metabolic Function and Oxidative Stress in 3D Engineered Brain Tissue Models

Yang Zhang, Maria G. Savvidou, Volha Liaudanskaya, Varshini Ramanathan, Thi Tho Bui, Matthew Lindley, Yuhang Fu, Ash Sze, Ugochukwu O. Ugwu, Matthew E. Dilsizian, Xinjie Chen, Sevara Nasritdinova, Aonkon Dey, Eric L. Miller, David Lee Kaplan, Irene Georgakoudi

This study develops a label-free optical method to assess metabolic function and oxidative stress in 3D brain tissue models using spectral imaging and fluorescence lifetime analysis.

Communications Biology · Dec 2, 2025Peer-reviewedBioengineering