Author

Binya Liu

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Alexis J. CombesiD· 2 shared Juan C. IrwiniD· 2 shared Kim Chi VoiD· 2 shared Linda C. GiudiceiD· 2 shared Marina SirotaiD· 2 shared Tomiko OskotskyiD· 2 shared Amber Casillas· 1 shared Ana Almonte-LoyaiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Alexis J. CombesORCID

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2 papers

Recent·Most cited

Anticlustering for Sample Allocation To Minimize Batch Effects

Martin Papenberg, Cheng Wang, Maïgane Diop, Syed Hassan Bukhari, Boris Oskotsky, Brittany R. Davidson, Kim Chi Vo, Binya Liu, Juan C. Irwin, Alexis J. Combes, Brice L Gaudilliere, Jingjing Li, David K. Stevenson, Gunnar W. Klau, Linda C. Giudice, , Tomiko Oskotsky

The paper introduces anticlustering to balance batches and minimize batch effects in high-throughput sequencing, showing improved balance compared to existing methods.

Cell Reports Methods · Aug 1, 2025Peer-reviewedBioinformatics

Single-Cell Profiling Reveals Altered Endometrial Cellular Features Across the Menstrual Cycle in Endometriosis Patients

Ana Almonte-Loya, Wanxin Wang, Sahar Houshdaran, Xinyu Tang, Emily Flynn, Binya Liu, Divyashree Kushnoor, CAMRAN R. NEZHAT, Felipe Vilella, Carlos Simón, Kim Chi Vo, Amber Casillas, Umair Khan, Carlota Peredas, Tomiko Oskotsky, , Linda C. Giudice

The paper uses single-cell transcriptomics to analyze endometrial cells from endometriosis patients, revealing altered cellular features and immune communication networks across the menstrual cycle.

bioRxiv · Jul 21, 2025 · PreprintBioinformatics