Author

Charlie H. McPhillips

University of Copenhagen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1

Frequent Co-Authors

Adam Duun GottliebiD· 1 shared Dennis S Nielsen· 1 shared Dennis Sandris NielseniD· 1 shared Emma Schack WiedenbeiniD· 1 shared Eoghan Thomas Reilly· 1 shared Gjorgji MadjaroviD· 1 shared Gladys Stolberg-MathieuiD· 1 shared Henriette Lyng RøderiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

Adam Duun GottliebORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintAug 29, 2026

Ultra-High Multiplexing Enables Near-Full-Length 16S rRNA Gene Amplicon Sequencing of Over 1,200 Gut Microbiome Samples on a Single Nanopore Flow Cell

Charlie H. McPhillips, Eoghan Thomas Reilly, Gladys Stolberg-Mathieu…·Łukasz Krych

This paper introduces a high-throughput sequencing method using Oxford Nanopore Technologies to sequence over 1,200 gut microbiome samples with near-full-length 16S rRNA gene amplicons, achieving high accuracy and scalability.

DOI 10.64898/2026.08.29.747698

humanmetagenomics

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MicrobiologyJournal of Applied MicrobiologyPeer-reviewedJan 17, 2026

A chemically defined medium to support the growth of food-relevant Bacillus species

Tessa S. Canoy, Emma Schack Wiedenbein, Charlie H. McPhillips…·Dennis S Nielsen

This paper develops a chemically defined medium, Pafoba, that supports the growth of multiple food-relevant Bacillus species, improving reproducibility and enabling detailed metabolic studies.

DOI 10.1093/jambio/lxag019

bacteria (other)experimental assay

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