Author

Charlotte Proudhon

Primary ORCID profile (0000-0002-4649-4574 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Charlotte ProudhoniD1 paper · Inserm

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Ramya RaviramiD· 2 shared Richard BonneauiD· 2 shared Sana Badri· 2 shared Valentina SnetkovaiD· 2 shared Alexandra Pender· 1 shared Alexandra S Whale· 1 shared Alison S Devonshire· 1 shared Alvaro Gonzalez Hernandez· 1 shared

Activity by Year

2016-2016 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Ramya RaviramORCID

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Author profile →

3 papers

Recent·Most cited

Molecular BiologybioRxivSep 28, 2016

AN INTERNATIONAL INTER-LABORATORY DIGITAL PCR STUDY DEMONSTRATES HIGH REPRODUCIBILITY FOR THE MEASUREMENT OF A RARE SEQUENCE VARIANT

Alexandra S Whale, Alison S Devonshire, George Karlin-Neumann…·Jim Huggett

This study demonstrates that digital PCR (dPCR) provides highly reproducible measurements of a rare genetic variant across multiple labs without calibration.

DOI 10.1021/acs.analchem.6b03980

DNA methylationexperimental assay

𝕏 PostBluesky

GenomicsNucleic Acids ResearchPeer-reviewedJul 20, 2016

The interdependent nature of multi-loci associations can be revealed by 4C-Seq

Tingting Jiang, Ramya Raviram, Pedro P Rocha…·Yuval Kluger

The paper introduces a method to identify multi-loci chromatin interactions using 4C-seq data and demonstrates its application to Tcrb and Igk enhancer interactions.

DOI 10.1093/nar/gkw568

𝕏 PostBluesky

BioinformaticsPLOS Computational BiologyPeer-reviewedMar 3, 2016

4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments

Ramya Raviram, Pedro P. Rocha, Christian L. Müller…·Jane Skok

This paper introduces 4C-ker, a method that improves the reproducibility of identifying genome-wide interactions from 4C-Seq data by accounting for signal biases and varying resolution.

DOI 10.1371/journal.pcbi.1004780

ChIP-seqstatistical model

𝕏 PostBluesky