Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package
D. J. Mermelstein, C. Lin, G. Nelson, R. Kretsch, J. A. McCammon, R. C. Walker
The paper introduces a GPU-accelerated implementation of thermodynamic integration in AMBER for faster and more efficient alchemical free energy calculations.
bioRxiv · Jan 15, 2018Biophysics