Author

D. J. Richter

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Ecology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

C. Berney· 2 shared A. Ereskovsky· 1 shared A. Fernandez-Guerra· 1 shared A. G. Morante· 1 shared A. Garcia De Las Bayonas· 1 shared A. Guillen· 1 shared A. S. Arroyo· 1 shared C. Bowler· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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2 shared papersEcology

C. Berney

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Dollo parsimony overestimates ancestral gene content reconstructions

A. G. Morante, L. Gueguen, P. Natsidis, M. J. Telford, D. J. Richter

This study compares Dollo parsimony and maximum likelihood methods for ancestral gene content reconstruction, finding Dollo parsimony overestimates ancestral gene content, especially near the root of the tree.

bioRxiv · Nov 20, 2023Evolutionary Biology

Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding

K. Mitsi, D. J. Richter, A. S. Arroyo, D. Lopez-Escardo, M. Anto, A. Guillen, I. Ruiz-Trillo

The paper uses metabarcoding to analyze microeukaryote diversity in Sanabria Lake, revealing new molecular data and community structures in different habitats.

bioRxiv · Jun 30, 2022Ecology

Colonial choanoflagellate isolated from Mono Lake harbors a microbiome

K. Hake, P. T. West, K. L. McDonald, D. Laundon, A. Garcia De Las Bayonas, C. Feng, P. Burkhardt, D. J. Richter, J. Banfield, N. King

The paper isolates and characterizes a new colonial choanoflagellate species, Barroeca monosierra, from Mono Lake that hosts a microbiome, offering a model for studying eukaryote-bacteria interactions.

bioRxiv · Mar 30, 2021Microbiology

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

D. J. Richter, R. Watteaux, T. Vannier, J. Leconte, P. Fremont, G. Reygondeau, N. Maillet, N. Henry, G. Benoit, O. Da Silva, T. O. Delmont, A. Fernandez-Guerra, S. Suweis, R. Narci, C. Berney, , P. Peterlongo

The paper analyzes plankton genomic distribution across oceans to show how large-scale currents shape biogeography, revealing size-dependent patterns and basin-scale transport effects.

bioRxiv · Dec 24, 2020Ecology

EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes

D. J. Richter, C. Berney, J. F. H. Strassert, Y.-P. Poh, E. K. Herman, S. A. Munoz-Gomez, J. A. Wideman, F. Burki, C. de Vargas

EukProt provides a database of predicted proteins from 993 eukaryotic species to support phylogenomic and gene family evolution studies.

bioRxiv · Jun 30, 2020Evolutionary Biology

Transcriptome sequencing and delimitation of cryptic Oscarella species (O. carmela and O. pearsei sp. nov) from California, USA.

A. Ereskovsky, D. J. Richter, D. V. Lavrov, K. J. Schippers, S. A. Nichols

The paper describes a new sponge species, Oscarella pearsei, and redescribes Oscarella carmela, using transcriptome and mitochondrial data to distinguish them from each other and clarify their phylogenetic relationships.

bioRxiv · Apr 11, 2017Evolutionary Biology