Author

D. M. Karl

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Ecology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. E. White· 2 shared E. F. DeLong· 2 shared E. V. Armbrust· 2 shared J. M. Eppley· 2 shared S. T. Dyhrman· 2 shared S. T. Wilson· 2 shared A. E. Ingalls· 1 shared A. K. Boysen· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersEcology

A. E. White

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Nitrogen fixation in mesoscale eddies of the North Pacific Subtropical Gyre: patterns and mechanisms

M. Dugenne, M. R. Gradoville, M. J. Church, B. Barone, S. T. Wilson, U. Sheyn, M. Harke, K. M. Björkman, N. J. Hawco, A. M. Hynes, F. Ribalet, A. E. White, D. M. Karl, E. F. DeLong, S. T. Dyhrman, , J. Zehr

The paper investigates elevated nitrogen fixation rates in mesoscale eddies of the North Pacific Subtropical Gyre, finding that anticyclones support higher diazotroph abundances due to phosphate limitation relief, while physical dynamics influence other taxa.

Global Biogeochemical Cycles · Apr 18, 2023Peer-reviewedEcology

Differential timing for glucose assimilation in Prochlorococcus and coexistent microbial populations at the North Pacific Subtropical Gyre

M. d. C. Munoz-Marin, S. Duhamel, K. M. Bjorkman, J. D. Magasin, D. M. Karl, J. Diez, J. M. Garcia Fernandez

The paper investigates glucose assimilation timing in Prochlorococcus and coexisting microbes, finding circadian rhythms in assimilation and transcriptional changes in response to glucose.

bioRxiv · Oct 4, 2021Microbiology

Community-scale Synchronization and Temporal Partitioning of Gene Expression, Metabolism, and Lipid Biosynthesis in Oligotrophic Ocean Surface Waters

D. Muratore, A. K. Boysen, M. J. Harke, K. W. Becker, J. R. Casey, S. N. Coesel, D. R. Mende, S. T. Wilson, F. O. Aylward, J. M. Eppley, A. Vislova, S. Peng, R. A. Rodriguez-Gonzalez, S. J. Beckett, E. V. Armbrust, , J. S. Weitz

The paper uses machine learning to analyze time series data from ocean surface waters, revealing synchronized and asynchronous gene expression patterns linked to diel cycles and microbial niche partitioning.

bioRxiv · May 15, 2020 · PreprintEcology