Author

D. M. Needham

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 3 Ecology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Assay:metagenomics· 3 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

J. A. Fuhrman· 3 shared E. B. Fichot· 2 shared C. G. Fichot· 1 shared C. L. Dai· 1 shared D. A. Weitz· 1 shared E. D. Evans· 1 shared E. J. Alm· 1 shared E. Wang· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

J. A. Fuhrman

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Microbe-seq: high-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome

W. Zheng, S. Zhao, Y. Yin, H. Zhang, D. M. Needham, E. D. Evans, C. L. Dai, P. J. Lu, E. J. Alm, D. A. Weitz

Microbe-seq enables strain-resolved genome reconstruction from complex microbial communities, revealing intra-phylum horizontal gene transfer and bacteriophage-bacterial associations in the human gut.

bioRxiv · Dec 14, 2020 · PreprintMicrobiology

Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities and denoising algorithms

Y.-C. Yeh, J. C. McNichol, D. M. Needham, E. B. Fichot, J. A. Fuhrman

The paper validates universal 16S and 18S rRNA primers for comprehensive microbial community profiling using mock communities and shows their effectiveness over eukaryote-specific primers.

bioRxiv · Dec 6, 2019 · PreprintMicrobiology

Influence of light on particulate organic matter utilization by attached and free-living marine bacteria

L. Gomez-Consarnau, D. M. Needham, P. K. Weber, J. A. Fuhrman, X. Mayali

This study shows light affects particle degradation and C/N incorporation by marine bacteria, altering microbial community structure and metabolism.

bioRxiv · Jan 31, 2019Ecology

Dynamics and interactions of highly resolved marine plankton via automated high frequency sampling

D. M. Needham, E. B. Fichot, E. Wang, L. Berdjeb, J. A. Cram, C. G. Fichot, J. A. Fuhrman

The paper uses high-frequency rRNA gene and rRNA sequencing to study marine plankton dynamics and interactions, revealing rapid responses and ecological correlations.

bioRxiv · Mar 23, 2018Microbiology