Common drugs alter microbial protein expression, but not composition in fecal cultures from Crohn's disease patients
H. Becker, R. Mohren, G. Le, L. Derijks, D. Jonkers, J. Penders
bioRxiv · Aug 19, 2023 · PreprintMicrobiology
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J. Penders
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
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2017-2023 · peak 3/yrCo-Author Collaboration Network
10 top collaborators · 11 mutual co-author linksFocal author (center)Selected co-authorORCID co-authorUnlinked name
Curved chords = mutual co-authorship8 papers
Recent·Most cited
Specific gut pathobionts escape antibody coating and are enriched during flares in patients with severe Crohn's disease
C. Eriksen, N. B. Danneskiold-Samsoe, J. M. Moll, P. N. Myers, P. W. Bondegaard, S. Vejrum, T. B. Hansen, L. B. Rosholm, P. Rausch, K. H. Allin, T. Jess, K. Kristiansen, J. Penders, D. M. Jonkers, S. Brix
bioRxiv · Jun 30, 2023Immunology
Capturing the dynamics of microbiomes using individual-specific networks
B. Yousefi, F. Melograna, G. Galazzo, N. van Best, M. Mommers, J. Penders, B. Schwikowski, K. van Steen
The paper introduces MNDA, a framework for analyzing microbiome dynamics using individual-specific networks, showing improved prediction and subpopulation detection compared to traditional methods.
bioRxiv · Jan 22, 2023 · PreprintMicrobiology
Higher in vitro mucin degradation, but no increased paracellular permeability by faecal water from Crohn's disease patients
H. E. Becker, N. Kameli, A. Rustichelli, F. R. Stassen, J. Penders, D. M. Jonkers
This study finds that faecal water from Crohn's disease patients shows higher mucin degradation in vitro but does not cause increased paracellular permeability.
bioRxiv · Aug 26, 2022 · PreprintMicrobiology
Cross-sectional analysis of the microbiota of the human gut and their direct environment (exposome) in a household cohort in northern Vietnam.
B. Vu Thi Ngoc, H. Ho Bich, G. Galazzo, D. Vu Tien Viet, M. Oomen, T. Nghiem Nguyen Minh, H. Tran Huy, R. Van Doorn, H. F. Wertheim, J. Penders
The paper analyzes the gut microbiota and environmental interactions in a Vietnamese household cohort, finding reduced diversity in antibiotic users and potential antimicrobial resistance gene exchange between humans and animals.
bioRxiv · Feb 23, 2021 · PreprintMicrobiology
Extraintestinal pathogenic Escherichia coli (ExPEC) are associated with prolonged carriage of extended-spectrum β-lactamase-producing E. coli acquired during travel
B. C. van der Putten, J. M. van Hattem, J. Penders, COMBAT Consortium, D. R. Mende, C. Schultsz
This study identifies extraintestinal pathogenic E. coli (ExPEC) as more likely to persist in travelers' intestines for over 12 months compared to other E. coli lineages.
bioRxiv · Sep 23, 2020 · PreprintMicrobiology
Higher prevalence of Bacteroides fragilis in Crohn's disease exacerbations and strain-dependent increase of epithelial resistance
H. E. F. Becker, C. Jamin, L. Bervoets, P. Xu, M. J. Pierik, F. R. M. Stassen, P. H. M. Savelkoul, J. Penders, D. M. A. E. Jonkers
This study finds higher Bacteroides fragilis prevalence in Crohn's disease exacerbations and shows that bft-positive strains increase intestinal epithelial resistance.
bioRxiv · May 16, 2020Microbiology
Global Phylogenetic Analysis Of Escherichia coli And Plasmids Carrying The mcr-1 Gene Indicates Bacterial Diversity But Plasmid Restriction
S. Matamoros, J. M. van Hattem, M. S. Arcilla, N. Willemse, D. Melles, J. Penders, T. Nguyen Vinh, H. Ngo Thi, COMBAT consortium, M. D. de Jong, C. Schultsz
The paper analyzes the global spread of the mcr-1 gene in E. coli and associated plasmids, finding high bacterial diversity but limited plasmid types responsible for gene transfer.
bioRxiv · Nov 2, 2017Microbiology