Author

S. Matamoros

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 5

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:whole-genome sequencing· 4 Organism:E. coli· 3 Approach:experimental assay· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

C. Schultsz· 5 shared COMBAT Consortium· 2 shared COMPARE ML-AMR group· 2 shared D. R. Mende· 2 shared I. Csabai· 2 shared M. D. de Jong· 2 shared O. Lund· 2 shared B. A. Pataki· 1 shared

Activity by Year

2017-2020 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

5 shared papersMicrobiology

C. Schultsz

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Internal Control for process monitoring of clinical metagenomic next-generation sequencing of urine samples

V. A. Janes, J. van der Laan, S. Matamoros, D. R. Mende, M. D. de Jong, C. Schultsz

The paper introduces an internal control method for metagenomic next-generation sequencing of urine samples to improve process control and reduce technical bias.

bioRxiv · Mar 27, 2020Microbiology

Escherichia ruysiae sp. nov., isolated from an international traveller

B. C. van der Putten, S. Matamoros, D. R. Mende, COMBAT Consortium, C. Schultsz

The paper isolates and characterizes a new Escherichia species, E. ruysiae, by genomic and phylogenetic analysis of a strain from an international traveller.

bioRxiv · Feb 19, 2020 · PreprintMicrobiology

Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning

B. A. Pataki, S. Matamoros, B. C. L. van der Putten, D. Remondini, E. Giampieri, D. Aytan-Aktug, R. S. Hendriksen, O. Lund, I. Csabai, C. Schultsz, COMPARE ML-AMR group

This paper predicts ciprofloxacin minimum inhibitory concentration in Escherichia coli using machine learning based on genome-wide mutation profiles and antimicrobial resistance gene presence.

bioRxiv · Jan 17, 2020Microbiology

Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole genome sequences

S. Matamoros, R. Hendriksen, B. Pataki, N. Pakseresht, M. Rossello, N. Silvester, C. Amid, COMPARE ML-AMR group, G. Cochrane, I. Csabai, O. Lund, C. Schultsz

The paper introduces an online repository for sharing antimicrobial susceptibility data linked to whole genome sequences to enhance AMR surveillance and research.

bioRxiv · Jan 28, 2019Microbiology

Global Phylogenetic Analysis Of Escherichia coli And Plasmids Carrying The mcr-1 Gene Indicates Bacterial Diversity But Plasmid Restriction

S. Matamoros, J. M. van Hattem, M. S. Arcilla, N. Willemse, D. Melles, J. Penders, T. Nguyen Vinh, H. Ngo Thi, COMBAT consortium, M. D. de Jong, C. Schultsz

The paper analyzes the global spread of the mcr-1 gene in E. coli and associated plasmids, finding high bacterial diversity but limited plasmid types responsible for gene transfer.

bioRxiv · Nov 2, 2017Microbiology