Author

D. Shasha

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2 Bioengineering· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:experimental assay· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

A. P. Mähönen· 1 shared A. Traven· 1 shared B. Blob· 1 shared B. De Rybel· 1 shared B. Gottgens· 1 shared B. Scheres· 1 shared B. Shen· 1 shared C. Latorre· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperPlant Biology

A. P. Mähönen

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Author profile →

4 papers

Recent·Most cited

Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert

T. Dussarrat, R. Nilo-Poyanco, T. C. Moyano, S. Prigent, T. L. Jeffers, F. P. Diaz, G. Decros, L. Audi, V. M. Sondervan, B. Shen, V. Araus, D. Rolin, D. Shasha, G. M. Coruzzi, Y. Gibon, , R. A. Gutierrez

The paper identifies common biochemical strategies across phylogenetically diverse Atacama Desert plant species adapted to extreme conditions.

bioRxiv · Aug 25, 2023Plant Biology

Candida auris evades innate immunity by using metabolic strategies to escape and kill macrophages while avoiding antimicrobial inflammation

H. C. Weerasinghe, C. Simm, T. Djajawi, I. Tedja, T. L. Lo, D. Shasha, N. Mizrahi, F. A. B. Olivier, M. Speir, K. E. Lawlor, R. Ben-Ami, A. Traven

This study shows Candida auris evades macrophage immunity through metabolic strategies that prevent antimicrobial responses and allow survival.

bioRxiv · Feb 28, 2023 · PreprintMicrobiology

Analysis of phloem trajectory links tissue maturation to cell specialization.

P. Roszak, J.-o. Heo, B. Blob, K. Toyokura, M. A. de Luis Balaguer, W. Lau, F. K. Hamey, J. Cirrone, X. Wang, R. Ursache, H. Tavares, K. Verstaen, J. Wendrich, C. W. Melnyk, D. Shasha, , Y. Helariutta

The paper reconstructs the protophloem developmental trajectory in Arabidopsis root cells to show how maturation gradients and transcription factors regulate cell specialization.

bioRxiv · Jan 18, 2021 · PreprintPlant Biology

An Adaptive Geometric Search Algorithm for Macromolecular Scaffold Selection

T. Jiang, D. Renfrew, K. Drew, N. Youngs, G. Butterfoss, D. Shasha, R. Bonneau

This paper introduces an adaptive geometric search algorithm for macromolecular scaffold selection, improving efficiency in matching functional motifs to protein surfaces.

bioRxiv · Jan 11, 2017Bioengineering