Author

David J Winter

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Approach:statistical model· 2 Organism:chicken / avian· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:virus· 1

Frequent Co-Authors

Reed A Cartwright· 2 shared Allan Y-C Chang· 1 shared Ananias Escalante· 1 shared Andres Felipe A Vallejo· 1 shared Don Conrad· 1 shared Hongan LongiD· 1 shared Maria A Pacheco· 1 shared Mariel Balboa· 1 shared

Activity by Year

2015-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

Reed A Cartwright

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3 papers

Recent·Most cited

Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions

Steven H Wu, Rachel S Schwartz, David J Winter, Don Conrad, Reed A Cartwright

The paper models whole genome sequencing read depth using mixtures of Dirichlet-multinomial distributions to improve genotyping accuracy and de novo mutation detection.

Bioinformatics · Mar 15, 2017Peer-reviewedGenomics

Low base-substitution mutation rate in the germline genome of ciliate Tetrahymena thermophila

Hongan Long, David J Winter, Allan Y-C Chang, Way Sun, Steven H. Whu, Mariel Balboa, Ricardo BR Azevedo, Reed A Cartwright, Michael Lynch, Rebecca A Zufall

The paper measures the germline base-substitution mutation rate in Tetrahymena thermophila and finds it to be low, similar to Paramecium tetraurelia, but notes fitness decline in exclusion lines suggests other factors contribute to mutational load.

Genome Biology and Evolution · Sep 15, 2016Peer-reviewedEvolutionary Biology

Whole genome sequencing of field isolates reveals extensive genetic diversity in Plasmodium vivax from Colombia

David J Winter, Maria A Pacheco, Andres Felipe A Vallejo, Rachel S. Schwartz, Myriam Arevalo-Herrera, Socrates Herrera, Reed Cartwright, Ananias Escalante

This paper reports whole-genome sequencing of Plasmodium vivax from Colombia, revealing genetic diversity and drug resistance markers.

PLOS Neglected Tropical Diseases · Dec 28, 2015Peer-reviewedGenomics