Author
Indian Institute of Science BangalorePrimary ORCID profile (0000-0002-5047-6985 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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5 papers
Recent·Most cited
Dibyendu Mondal, Sabyasachi Paul Chowdhury, Govardhan Reddy
The paper uses molecular dynamics simulations to study conformational switching in a SAM-III riboswitch, showing Mg2+ stabilizes the ON-state and multiple pathways contribute to the transition between ON and OFF states.
bioRxiv · Sep 11, 2026 · PreprintBiophysics
Sk HABIBULLAH, Dibyendu Mondal, S R Satish Kumar, Govardhan Reddy
The paper uses simulations to study how Mg2+ ions influence the folding and stabilization of the GAAA tetraloop-receptor interaction in a group I intron.
The Journal of Physical Chemistry B · Jun 8, 2026Peer-reviewedBiophysics
Dibyendu Mondal, Sk Habibullah, Govardhan Reddy
This study identifies the dimerization mechanism of HIV-1 RNA hairpins to extended duplex structures using simulations, revealing intermediates and ion-dependent pathways.
The Journal of Physical Chemistry B · Feb 10, 2026Peer-reviewedBiophysics
Dibyendu Mondal, Sk Habibullah, Lipika Baidya, Mahesh Singh Harariya, Govardhan Reddy
This study shows how Co2+ binding drives folding of the NiCo riboswitch by stabilizing non-canonical base pairs and modulating conformational flexibility at helical junctions.
Journal of Chemical Theory and Computation · Nov 21, 2025Peer-reviewedBiophysics
Dibyendu Mondal, Govardhan Reddy
This study uses computer simulations to reveal the conformational pathways of a T-box riboswitch in recognizing tRNA, showing three thermodynamic states and their dependence on Mg2+ concentration, with implications for antibiotic development.
The Journal of Physical Chemistry Letters · Sep 17, 2025Peer-reviewedBiophysics