Author

Dong Xu

Chinese Academy of Medical Sciences & Peking Union Medical College

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 3 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:database / resource· 2 Assay:proteomics· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Qin MaiD· 2 shared Ana C. Ricardo· 1 shared Anjun MaiD· 1 shared Bing YangiD· 1 shared Cankun WangiD· 1 shared Chen CheniD· 1 shared Chen‐Rui XiaiD· 1 shared Chunhui XuiD· 1 shared

Activity by Year

2021-2026 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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2 shared papersBioinformatics

Qin MaORCID

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Author profile →

5 papers

Recent·Most cited

A Principled Statistical Framework for Analyzing Spatial Patterns in Spatially Resolved Multi-Omics

Jinpu Li, Mauminah Raina, Yiqing Wang, Shuai Zeng, Yang Yu, Xiufan Yu, Xiaojie Jin, Yuzhou Chang, Daniel Feliciano, Jonathan Himmelfarb, Ana C. Ricardo, Patrick H. Nachman, Miguel Vazquez, M. Luiza Caramori, Laura Barisoni, , Dong Xu

This paper introduces STORM, a statistical framework for analyzing spatial patterns in multi-omics data, demonstrating reliable performance in detecting spatial structures and supporting study design decisions.

bioRxiv · Aug 10, 2026 · PreprintBioinformatics

PlantMDCS: A code-free, modular toolkit for rapid deployment of plant multi-omics databases

Chen Chen, Yuanyuan Liu, Lei Wang, Jingyi Sai, Yuetian Wang, Yue Wen, Jun Sun, ZIXIANG LI, Faguo Wang, Jia Tian, Dong Xu, Yuhan Fang

PlantMDCS provides a code-free, modular platform for deploying plant multi-omics databases, enabling efficient data management and analysis without programming expertise.

Plant Communications · Jul 1, 2026Peer-reviewedBioinformatics

The chitin receptor-interacting protein LIK1 regulates extracellular ATP signaling via interaction with P2K1 in Arabidopsis thaliana

Jinrong Wan, Mengran Yang, Jae Hyo Song, Chunhui Xu, Sung‐Hwan Cho, Mowei Zhou, Ljiljana Paša‐Tolić, Bing Yang, Dong Xu, Gary S. Stacey

This study shows LIK1 interacts with P2K1 and regulates eATP signaling in Arabidopsis, expanding its role beyond chitin signaling.

bioRxiv · Apr 10, 2026 · PreprintPlant Biology

CNS diseases cerebrospinal fluid single-cell atlas reveals immune characteristics of neuropsychiatric systemic lupus erythematosus

Xing Wang, Shang-Zhu Zhang, Siyuan Fan, Wen-Jia Zhang, Tianyi Ma, Wei Fang, Nan Liang, Yang Wu, Shi-Qi Yang, Chen‐Rui Xia, Zi-Fan Zhao, Jiuliang Zhao, Dong Xu, Xiao-Feng Zeng, Hongzhi Guan, , M-T Li

The paper constructs a single-cell atlas of cerebrospinal fluid and blood from CNS diseases, revealing immune features of NPSLE and providing a public resource for future research.

bioRxiv · Apr 2, 2026 · PreprintGenomics

Assessing deep learning algorithms in cis-regulatory motif finding based on genomic sequencing data

Yan Wang, Shuangquan Zhang, Anjun Ma, Cankun Wang, Zhenyu Wu, Dong Xu, Qin Ma

This study evaluates 20 deep learning models for cis-regulatory motif finding using genomic data, finding that model choice depends on data type and size.

Briefings in Bioinformatics · Sep 8, 2021Peer-reviewedBioinformatics