Author

E. E. Allen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Ecology· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 5 Approach:experimental assay· 4 Research Focus:cell type annotation· 3 Research Focus:ecology & biodiversity· 2 Organism:multiple species· 2 Organism:non-human primate· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1

Frequent Co-Authors

J. J. Minich· 2 shared R. Knight· 2 shared A. Gonzalez· 1 shared A. Harer· 1 shared A. J. Jamieson· 1 shared A. M. Plominsky· 1 shared A. Oliver· 1 shared A. T. Neu· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersEcology

J. J. Minich

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish

A. Oliver, S. Podell, L. Wegley Kelly, W. J. Sparagon, A. M. Plominsky, R. S. Nelson, L. M. Laurens, S. Augyte, N. A. Sims, C. E. Nelson, E. E. Allen

This study identifies microbial symbionts in Kyphosus fish that collaboratively degrade macroalgal polysaccharides through genomic analysis and suggests their potential for industrial applications.

bioRxiv · Nov 28, 2023 · PreprintMicrobiology

Fish microbiomes 101: disentangling the rules governing marine fish mucosal microbiomes across 101 species

J. J. Minich, A. Harer, J. Vechinski, B. W. Frable, Z. Skelton, E. Kunselman, M. Shane, D. Perry, A. Gonzalez, D. McDonald, R. Knight, T. P. Michael, E. E. Allen

The paper analyzes microbiomes of 101 marine fish species to identify factors influencing microbial diversity and distribution across body sites and environments.

bioRxiv · Mar 7, 2022 · PreprintEcology

Microbiomes of hadal fishes contain similar taxa, obligate symbionts, and known piezophiles across trench habitats

J. M. Blanton, L. M. Peoples, M. E. Gerringer, C. M. Iacuniello, N. D. Gallo, T. D. Linley, A. J. Jamieson, J. C. Drazen, D. H. Bartlett, E. E. Allen

This study characterizes the gut microbiomes of hadal snailfishes from two trenches, revealing shared taxa and piezophiles that may contribute to deep-sea adaptation.

bioRxiv · Jan 15, 2022 · PreprintMicrobiology

Microbiome divergence of marine gastropod species separated by the Isthmus of Panama

A. T. Neu, M. E. Torchin, E. E. Allen, K. Roy

The paper examines how the formation of the Isthmus of Panama influenced microbiomes of marine gastropod species, finding varied effects across host genera and sample types.

bioRxiv · Jul 8, 2021Ecology

Microbial ecology of Atlantic salmon, Salmo salar, hatcheries: impacts of the built environment on fish mucosal microbiota

J. J. Minich, K. Jantawongsri, C. Johnston, K. Bowie, J. P. Bowman, R. Knight, B. Nowak, E. E. Allen

This study examines how the microbiota of water and tank biofilms in Atlantic salmon hatcheries influences fish mucosal microbiota across gill, skin, and digesta sites.

Applied and Environmental Microbiology · Jun 2, 2020Peer-reviewedMicrobiology

Genetic regulation of the bacterial omega-3 polyunsaturated fatty acid biosynthesis pathway

M. N. Allemann, E. E. Allen

This study identifies and characterizes a novel transcriptional regulator, pfaF, that controls the expression of the pfa operon involved in omega-3 fatty acid biosynthesis in Photobacterium profundum SS9.

bioRxiv · Jan 28, 2020Microbiology