Author

Eileen Wagner

Alameda County Public Health Department

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andrew J. GorzalskiiD· 1 shared Craig M. StephensiD· 1 shared David C. HessiD· 1 shared Farid TadrosiD· 1 shared Jared Lumpe· 1 shared Joel R. SevinskyiD· 1 shared Kevin G. LibuitiD· 1 shared Lynette Gumbleton· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Andrew J. GorzalskiORCID

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1 paper

Recent·Most cited

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, Andrew J. Gorzalski, Kevin G. Libuit, Vici Varghese, Tyler Lloyd, Farid Tadros, Tyler Arsimendi, Eileen Wagner, Craig M. Stephens, Joel R. Sevinsky, David C. Hess, Mark Pandori

GAMBIT uses k-mer based strategies and a curated database to identify bacteria from whole genome sequencing with confidence thresholds to reduce false identifications.

PLoS ONE · Feb 16, 2023Peer-reviewedBioinformatics