Author

Vici Varghese

Alameda County Public Health DepartmentORCID 0000-0003-2669-5966Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Andrew J. GorzalskiiD· 2 shared Mark PandoriiD· 2 shared Tyler LloydiD· 2 shared Christian M. GilliD· 1 shared Craig M. StephensiD· 1 shared David C. HessiD· 1 shared David P. NicolauiD· 1 shared Dustin Heaton· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

Andrew J. GorzalskiORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintNov 17, 2023

Public Health Response to Pan-Resistant Pseudomonas aeruginosa Sequence Type 309 with Tandem Guiana Extended Spectrum Beta Lactamases Genetic Characterization and In Vivo Efficacy Assessment using Translational Murine Model.

Tyler Lloyd, Christian M. Gill, Jade Aquino Herrera…·David P. Nicolau

The paper identifies a pan-resistant Pseudomonas aeruginosa strain with GES in California and assesses its treatment using a translational murine model.

DOI 10.1101/2023.11.17.567598

mouseexperimental assay

𝕏 PostBluesky

BioinformaticsPLoS ONEPeer-reviewedFeb 16, 2023

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, Andrew J. Gorzalski…·Mark Pandori

GAMBIT uses k-mer based strategies and a curated database to identify bacteria from whole genome sequencing with confidence thresholds to reduce false identifications.

32 citationstop 2%

bacteria (other)whole-genome sequencing

𝕏 PostBluesky