Author

Jared Lumpe

Santa Clara University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam Catching· 1 shared Aji Palar· 1 shared Alison M. MaxwelliD· 1 shared Andrew F. Kung· 1 shared Andrew J. GorzalskiiD· 1 shared Bryan Faust· 1 shared Calla Martyn· 1 shared Christa Caggiano· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBiochemistry

Adam Catching

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Author profile →

2 papers

Recent·Most cited

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, Andrew J. Gorzalski, Kevin G. Libuit, Vici Varghese, Tyler Lloyd, Farid Tadros, Tyler Arsimendi, Eileen Wagner, Craig M. Stephens, Joel R. Sevinsky, David C. Hess, Mark Pandori

GAMBIT uses k-mer based strategies and a curated database to identify bacteria from whole genome sequencing with confidence thresholds to reduce false identifications.

PLoS ONE · Feb 16, 2023Peer-reviewedBioinformatics

Robust Sequence Determinants of α-Synuclein Toxicity in Yeast Implicate Membrane Binding

Robert W. Newberry, Taylor Arhar, Jean Costello, George C. Hartoularos, Alison M. Maxwell, Zun Zar Chi Naing, Maureen Pittman, Nishith R. Reddy, Daniel M. C. Schwarz, Douglas R. Wassarman, Taia S. Wu, Daniel Barrero, Christa Caggiano, Adam Catching, Taylor B. Cavazos, , Jenna Pell

The paper uses deep mutational scanning in yeast to show that a toxic conformation of α-synuclein is stable under chemical perturbations, while mutations affecting toxicity are influenced by these perturbations.

bioRxiv · May 1, 2020Biochemistry