Managing genomic variant calling workflows with Swift/T
Azza E. Ahmed, Jacob R. Heldenbrand, Yan W. Asmann, Faisal M. Fadlelmola, Daniel S. Katz, Katherine I. Kendig, Matthew C. Kendzior, Tiffany Li, Yingxue Ren, Elliott Rodriguez, Matthew R. Weber, Justin M. Wozniak, Jennie Zermeno, Liudmila Sergeevna Mainzer
The paper describes a Swift/T wrapper for the GATK variant calling workflow to improve portability and maintainability across cluster environments.
PLoS ONE · Jul 9, 2019Peer-reviewedBioinformatics