Author

Emily R. Rhodes

University of Colorado Boulder

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1 Research Focus:sequence-to-function modeling· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexis M. WalkeriD· 1 shared Brian M. PeterseniD· 1 shared Cyrus M. HaasiD· 1 shared Edgardo Ayala· 1 shared Eliud O. OlooiD· 1 shared Guido Scarabelli· 1 shared Isabell K. Strawn· 1 shared Jacob Byerly· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBiochemistry

Alexis M. WalkerORCID

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintOct 28, 2025

Prioritizing Stability-enhancing Mutations using a Protein Language Model in conjunction with Physics-Based Predictions

Emily R. Rhodes, Guido Scarabelli, Jonathan Jou…·Eliud O. Oloo

The paper combines a protein language model and physics-based method to prioritize stability-enhancing mutations, achieving higher accuracy than either method alone.

DOI 10.1101/2025.10.28.683791

protein sequencedeep learning

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BiochemistryNature CommunicationsPeer-reviewedMay 10, 2024

An integrated technology for quantitative wide mutational scanning of human antibody Fab libraries

Brian M. Petersen, Monica B. Kirby, Karson M Chrispens…·Timothy A. Whitehead

The paper introduces MAGMA-seq, a technology for quantitative analysis of antibody sequence-function relationships, demonstrating its application in mapping antibody development pathways and identifying binding determinants.

26 citations

humanproteomics

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