Author

F. Di Giallonardo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:host-pathogen & immune response· 3 Approach:statistical model· 3 Assay:metagenomics· 2 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Organism:multiple species· 1

Frequent Co-Authors

E. C. Holmes· 4 shared A. S. Ortiz-Baez· 2 shared J. L. Geoghegan· 2 shared A. F. Read· 1 shared A. J. Carthey· 1 shared A. L. Towerton· 1 shared D. Peacock· 1 shared D. R. Bellwood· 1 shared

Activity by Year

2018-2020 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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4 shared papersEvolutionary Biology

E. C. Holmes

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Infectious disease phylodynamics with occurrence data

L. Featherstone, F. Di Giallonardo, E. C. Holmes, T. Vaughan, S. Duchene

The paper shows that incorporating occurrence data with birth-death models improves estimates of the basic reproductive number in phylodynamic analyses, while coalescent models are less affected by sampling biases but cannot use occurrence data.

bioRxiv · Sep 14, 2020Evolutionary Biology

Red fox viromes across an urban-rural gradient

S. J. Campbell, W. Ashley, M. Gil-Fernandez, T. M. Newsome, F. Di Giallonardo, A. S. Ortiz-Baez, J. E. Mahar, A. L. Towerton, M. Gillings, E. C. Holmes, A. J. Carthey, J. L. Geoghegan

This study compares viromes of urban and rural red foxes, finding differences in viral abundance and diversity, and identifies novel viruses with potential zoonotic relevance.

bioRxiv · Jun 15, 2020 · PreprintMicrobiology

Virome composition in marine fish revealed by meta-transcriptomics

J. L. Geoghegan, F. Di Giallonardo, M. Wille, A. S. Ortiz-Baez, V. A. Costa, T. Ghaly, J. C. Mifsud, O. M. Turnbull, D. R. Bellwood, J. E. Williamson, E. C. Holmes

The paper uses meta-transcriptomics to analyze virome composition in marine fish, identifying new viruses and factors shaping virome diversity.

bioRxiv · May 6, 2020 · PreprintMicrobiology

Punctuated evolution of myxoma virus: rapid and disjunct evolution of a recent viral lineage in Australia

P. J. Kerr, J.-S. Eden, F. Di Giallonardo, D. Peacock, J. Liu, T. Strive, A. F. Read, E. C. Holmes

This paper shows that Myxoma virus in Australia experienced a sudden evolutionary change with a faster mutation rate and disrupted clock-like evolution between 1996 and 2012, likely due to environmental changes affecting rabbit populations.

bioRxiv · Nov 8, 2018Evolutionary Biology