Author

F. J. Whelan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Research Focus:chromatin & epigenetic regulation· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

J. O. McInerney· 4 shared R. J. Hall· 2 shared A. McNally· 1 shared B. Constantinides· 1 shared C. Connor· 1 shared C. J. Creevey· 1 shared D. Pisani· 1 shared D. Sussfeld· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersEvolutionary Biology

J. O. McInerney

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Bursts of novel composite gene families at major nodes in animal evolution

P. O. Mulhair, R. J. Moran, J. s. Pathmanathan, D. Sussfeld, C. J. Creevey, K. Siu-Ting, F. J. Whelan, D. Pisani, B. Constantinides, E. Pelletier, p. lopez, E. Bapteste, J. O. McInerney, M. J. O'Connell

The paper identifies composite gene families in animals, showing they emerge abruptly at major evolutionary nodes and are independently evolved in multiple clades.

bioRxiv · Jul 10, 2023 · PreprintEvolutionary Biology

Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility

R. J. Hall, F. J. Whelan, E. A. Cummins, C. Connor, A. McNally, J. O. McInerney

This study identifies gene-gene relationships in an Escherichia coli accessory genome, showing that co-occurrence is driven by function and mobility.

bioRxiv · Mar 26, 2021Evolutionary Biology

Evidence for selection in a prokaryote pangenome

F. J. Whelan, R. J. Hall, J. O. McInerney

The paper analyzes Pseudomonas genomes to show that accessory genes are structured by selection, forming interacting gene sets that function together in strains.

bioRxiv · Oct 28, 2020 · PreprintMicrobiology

Coinfinder: Detecting Significant Associations and Dissociations in Pangenomes

F. J. Whelan, M. Rusilowicz, J. O. McInerney

Coinfinder identifies gene associations and dissociations in pangenomes by analyzing their phylogenetic distribution across gene families.

bioRxiv · Nov 29, 2019Microbiology