Author

F. Jupe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:plant (other)· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

J. P. Sandoval· 2 shared J. R. Ecker· 2 shared T. P. Michael· 2 shared A. C. Rivkin· 1 shared A. I. Witek· 1 shared B. B. Wulff· 1 shared B. Steuernagel· 1 shared C. Van Oosterhout· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersPlant Biology

J. P. Sandoval

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3 papers

Recent·Most cited

A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector

K. Witek, X. Lin, H. S. Karki, F. Jupe, A. I. Witek, B. Steuernagel, R. Stam, C. Van Oosterhout, S. Fairhead, J. M. Cocker, S. Bhanvadia, W. Barrett, C.-h. Wu, H. Adachi, T. Song, , J. D. Jones

The paper identifies a new R gene, Rpi-amr1, from Solanum americanum that provides broad-spectrum resistance to Phytophthora infestans and defines its allelic diversity.

bioRxiv · May 15, 2020Plant Biology

Genome and time-of-day transcriptome of Wolffia australiana link morphological extreme minimization with un-gated plant growth

T. P. Michael, E. Ernst, N. Hartwick, P. Chu, D. Bryant, S. Gilbert, S. Ortleb, E. L. Baggs, K. S. Sree, K. J. Appenroth, J. Fuchs, F. Jupe, J. P. Sandoval, K. V. Krasileva, L. Borisjuk, , E. Lam

This study analyzes the genome and time-of-day transcriptome of Wolffia australiana to link its extreme morphological minimization with reduced circadian regulation and continuous growth.

bioRxiv · Mar 31, 2020Plant Biology

The complex architecture and epigenomic impact of plant T-DNA insertions

F. Jupe, A. C. Rivkin, T. P. Michael, M. Zander, S. T. Motley, J. P. Sandoval, K. R. Slotkin, H. Chen, R. Castanon, J. R. Nery, J. R. Ecker

This study characterizes the structural complexity and epigenomic impact of T-DNA insertions in Arabidopsis using long-read sequencing technologies.

bioRxiv · Sep 5, 2018Plant Biology