Author

F. X. Quah

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 4 Organism:chicken / avian· 3 Assay:whole-genome sequencing· 3 Research Focus:development & morphogenesis· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

R. Durbin· 3 shared C. U. Yuan· 2 shared E. Miska· 2 shared G. F. Turner· 2 shared H. Svardal· 2 shared M. Blumer· 2 shared M. E. Santos· 2 shared M. V. Almeida· 2 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersEvolutionary Biology

R. Durbin

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Author profile →

4 papers

Recent·Most cited

Dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes

M. V. Almeida, M. Blumer, C. U. Yuan, P. Sierra, J. Price, F. X. Quah, A. Friman, A. Dallaire, G. Vernaz, A. Putman, A. Smith, D. Joyce, F. Butter, A. Haase, R. Durbin, , E. Miska

The paper investigates the dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes, revealing expanded piwil1 genes and divergent piRNA-producing loci.

bioRxiv · Apr 1, 2024Evolutionary Biology

A pangenomic perspective of the Lake Malawi cichlid radiation reveals extensive structural variation driven by transposable elements

F. X. Quah, M. V. Almeida, M. Blumer, C. U. Yuan, B. Fischer, K. See, B. Jackson, R. Zatta, B. Rusuwa, G. F. Turner, M. E. Santos, H. Svardal, M. Hemberg, R. Durbin, E. Miska

The paper uses a pangenomic approach to analyze Lake Malawi cichlid genomes, revealing extensive structural variation driven by transposable elements.

bioRxiv · Mar 28, 2024Evolutionary Biology

ChIP-seq and RNA-seq for complex and low-abundance tree buds reveal chromatin and expression co-dynamics during sweet cherry bud dormancy

N. Vimont, F. X. Quah, D. Schoepfer, F. Roudier, E. Dirlewanger, P. A. Wigge, B. Wenden, S. Cortijo

The paper develops a ChIP-seq and RNA-seq protocol for tree buds to study chromatin and expression dynamics during dormancy, finding a strong correlation between H3K4me3 enrichment and gene expression at the PavDAM5 locus.

bioRxiv · Oct 15, 2019Plant Biology

Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

H. Svardal, F. X. Quah, M. Malinsky, B. P. Ngatunga, E. A. Miska, W. Salzburger, M. Genner, G. F. Turner, R. Durbin

This study shows ancestral hybridisation contributed to diversification in Lake Malawi cichlids by introducing genetic variation that was differentially selected during speciation.

bioRxiv · Aug 18, 2019Evolutionary Biology