S. Cortijo

Fine tuning of hormonal signaling is linked to dormancy status in sweet cherry flower buds

This study links hormonal signaling, particularly ABA and GA pathways, to dormancy status in sweet cherry flower buds using physiological, transcriptional, and modeling approaches.

Co-expression networks from gene expression variability between genetically identical seedlings can reveal novel regulatory relationships

This paper constructs co-expression networks from gene expression variability in genetically identical plants without perturbation, revealing novel regulatory relationships and gene functions.

DEK influences the trade-off between growth and arrest via H2A.Z-nucleosomes in Arabidopsis

This study identifies DEK's role in balancing growth and stress resilience in Arabidopsis through H2A.Z-nucleosomes, with conserved chromatin signatures in human cells.

ChIP-seq and RNA-seq for complex and low-abundance tree buds reveal chromatin and expression co-dynamics during sweet cherry bud dormancy

The paper develops a ChIP-seq and RNA-seq protocol for tree buds to study chromatin and expression dynamics during dormancy, finding a strong correlation between H3K4me3 enrichment and gene expression at the PavDAM5 locus.

From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy

This study identifies transcriptomic changes across sweet cherry bud dormancy stages and develops a model to predict dormancy phases using gene expression data.

Widespread inter-individual gene expression variability in Arabidopsis thaliana

This study identifies widespread gene expression variability among Arabidopsis thaliana plants under identical conditions and links it to environmental response genes and regulatory factors.

The G-box transcriptional regulatory code in Arabidopsis

The paper constructs a gene regulatory network for G-box motifs in Arabidopsis, showing that flanking sequences influence specificity and presenting a resource for regulatory predictions.