Author

Florian Schattenberg

Helmholtz Centre for Environmental Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:experimental assay· 2 Organism:bacteria (other)· 1 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Organism:E. coli· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

Susann MülleriD· 3 shared Gorkhmaz AbbaszadeiD· 2 shared Berenike Schmalfuß· 1 shared Boris TailleferiD· 1 shared Christian L. MülleriD· 1 shared Eric CascalèsiD· 1 shared Kathrin StückrathiD· 1 shared Medina FeldliD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersMicrobiology

Susann MüllerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Water Kefir as a Model for Aggregative Development of Microbial Multicellularity within a Multispecies Biofilm

Pia Bethge, Berenike Schmalfuß, Samuel Ropert, Florian Schattenberg, Gorkhmaz Abbaszade, Susann Müller, Thomas Henle, Yael Politi, Thorsten Mascher

This study investigates water kefir grains as a model for microbial multicellularity, revealing an emergent growth function in multispecies biofilms.

bioRxiv · Oct 10, 2026 · PreprintMicrobiology

biscot: an Optimal Transport framework for multimodal bacterial single-cell data analysis

Medina Feldl, Gorkhmaz Abbaszade, Florian Schattenberg, Kathrin Stückrath, Susann Müller, Christian L. Müller

biscot uses optimal transport to integrate and analyze multimodal bacterial single-cell data, showing improved speed and accuracy in disentangling communities and aligning gene expression with cytometry data.

bioRxiv · Mar 28, 2025 · PreprintBioinformatics

Type VI secretion phenotypic heterogeneity ensures trade-off between antibacterial activity and resistance in Enteroaggregative E. coli

Boris Taillefer, Florian Schattenberg, Thierry Doan, Susann Müller, Eric Cascalès

This study shows that Enteroaggregative E. coli exhibits T6SS phenotypic heterogeneity, enabling a trade-off between antibacterial activity and resistance in mixed microbial environments.

bioRxiv · Feb 11, 2025 · PreprintMicrobiology