Author

Fréderic Pepke

AgroParisTech

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metabolomics· 1

Frequent Co-Authors

Andréa RauiD· 1 shared Cassandre Bedu-FerrariiD· 1 shared Céline Chollet· 1 shared Christelle Hennequet‐AntieriD· 1 shared Claire CherbuyiD· 1 shared Cyril Chaudemanche· 1 shared Elisabetta GiuffraiD· 1 shared Fany BlanciD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Andréa RauORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 29, 2025

Adult porcine intestinal organoids as models for regional epithelial identity and individual regulatory variation

Fany Blanc, Smahane Chalabi, Fréderic Pepke…·Elisabetta Giuffra

The paper profiles RNA-seq from porcine intestinal organoids and tissues to assess their retention of regional identity and animal-specific molecular signatures.

DOI 10.1101/2025.10.29.679705

plant (other)bulk RNA-seq

𝕏 PostBluesky

MicrobiologymSystemsPeer-reviewedMar 5, 2024

In-depth characterisation of a selection of gut commensal bacteria reveals their functional capacities to metabolise dietary carbohydrates with prebiotic potential

Cassandre Bedu-Ferrari, Paul Biscarrat, Fréderic Pepke…·Claire Cherbuy

This study examines the metabolic capacities of gut commensal bacteria toward prebiotic carbohydrates, revealing strain-specific effects on metabolite production and gene expression.

30 citations

humanmetabolomics

𝕏 PostBluesky