Author

Smahane Chalabi

AgroParisTechORCID 0000-0002-2203-3722Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:plant (other)· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Andréa RauiD· 2 shared Elisabetta GiuffraiD· 2 shared Sarah DjebaliiD· 2 shared Alexey SokoloviD· 1 shared Christophe BattailiD· 1 shared Édith Le FlochiD· 1 shared Fany BlanciD· 1 shared Fréderic Pepke· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersGenomics

Andréa RauORCID

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3 papers

Recent·Most cited

Adult porcine intestinal organoids as models for regional epithelial identity and individual regulatory variation

Fany Blanc, Smahane Chalabi, Fréderic Pepke, Mayrone Mongellaz, Mathieu Charles, Andréa Rau, Sarah Djebali, Giorgia Egidy, Elisabetta Giuffra

The paper profiles RNA-seq from porcine intestinal organoids and tissues to assess their retention of regional identity and animal-specific molecular signatures.

bioRxiv · Oct 29, 2025 · PreprintGenomics

Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets

Smahane Chalabi, Linda M. P. Loonen, Jos Boekhorst, Houcheng Li, Lingzhao Fang, Peter W. Harrison, Wassim Lakhal, Jérôme Lluch, Alexey Sokolov, Sarah Djebali, Andréa Rau, Elisabetta Giuffra, Jerry Mark Wells

This study shows that high-fiber maternal diets alter gene expression and chromatin accessibility in fetuses and piglets, improving metabolic health and immune tolerance.

Genomics · Jan 13, 2025Peer-reviewedGenomics

Region-specific expression of young small-scale duplications in the human central nervous system

Solène Brohard, Vincent Frouin, Vincent Meyer, Smahane Chalabi, Jean‐François Deleuze, Édith Le Floch, Christophe Battail

The paper examines region-specific expression of paralogs in the human central nervous system using GTEx data, finding that young small-scale duplications (ySSDs) are more region-specific than other paralogs.

BMC Ecology and Evolution · Apr 21, 2021Peer-reviewedGenomics