Andréa Rau

The paper examines phenotypic variability across three generations of quails subjected to an initial environmental modification, finding increased epiline contribution to traits like body weight.

The paper integrates tissue-specific epigenetic annotations into genomic predictions of gene expression in three pig breeds, improving eQTL mapping interpretability but facing challenges in cross-breed predictions.

This study shows that inhibiting CSF1R in male MIA offspring improves sociability and memory, while female offspring show no improvement, highlighting sex-specific therapeutic potential.

The paper profiles RNA-seq from porcine intestinal organoids and tissues to assess their retention of regional identity and animal-specific molecular signatures.

This study shows that high-fiber maternal diets alter gene expression and chromatin accessibility in fetuses and piglets, improving metabolic health and immune tolerance.

The paper investigates the transcriptomic response of Prnp and Sprn double knockout mouse embryos to ShRNA lentiviral inoculation, finding reduced apoptosis and interferon responses in the double knockout compared to single knockouts.

The paper compares gene expression in caecal tonsils of two chicken lines infected with Salmonella Enteritidis to identify genes and pathways associated with differences in bacterial carriage.

This study evaluates BayesR's predictive performance and interpretability in genomic prediction using simulated data with varying genetic architectures and heritabilities.

This study investigates gut-mitochondria crosstalk in horses during endurance exercise, identifying mitochondrial gene expression changes linked to butyrate-producing bacteria and potential mechanisms involving PPARγ and the FRX-CREB axis.

This paper introduces padma, a pathway-centric tool that quantifies individualized multi-omic deviations in cancer, correlating them with clinical outcomes in breast and lung cancer.

The paper identifies temporally changing transcription factors and chromatin changes driving zebrafish CNS axon regeneration.

Regeneration Rosetta provides an interactive web tool to explore gene expression and chromatin accessibility data from zebrafish regeneration studies, enabling visualization, motif analysis, and functional interpretation.

The paper annotates transcriptomes and chromatin structures in liver and T cells from four livestock species using RNA-seq, ATAC-seq, and Hi-C, revealing conserved regulatory elements and genome organization patterns.

This paper investigates data transformations and model selection for RNA-seq co-expression analysis using Gaussian mixture models and proposes an R package for implementation.