Grace M. Mariene

Genome assembly variation and its implications for gene discovery in nematode species

The paper examines how genome assembly choices impact gene discovery in three nematode species, showing significant variation in gene family composition across different assemblers.

Different structural variant prediction tools yield considerably different results in Caenorhabditis elegans

The paper benchmarks structural variant prediction tools in C. elegans, showing performance varies by variant type and sequencing depth, and highlights the need for real-data reference datasets.

One species, two genomes: A critical assessment of inter isolate variation and identification of assembly incongruence in Haemonchus contortus

This study compares two genomes of Haemonchus contortus to identify technical errors and biological differences, finding significant assembly and annotation discrepancies.