Author

Gus Fridell

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Alexis J. BattleiD· 1 shared Apratim MitraiD· 1 shared Caroline EsnaultiD· 1 shared Daniela Marta RothiD· 1 shared Fabio Rueda FaucziD· 1 shared Fahad Karim KidwaiiD· 1 shared James IbeniD· 1 shared Jeremie Douglas OliveriD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenetic & Genomic Medicine

Alexis J. BattleORCID

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2 papers

Recent·Most cited

Prior knowledge informs graph neural networks to improve phenotype prediction from proteomics

Prabuddha Ghosh Dastidar, Gus Fridell, Joshua M Popp, Marios Arvanitis, Alexis J. Battle

The paper develops a graph neural network framework that integrates biological knowledge to predict phenotypes from proteomics data, outperforming linear models and other architectures.

medRxiv · Nov 23, 2025 · PreprintGenetic & Genomic Medicine

Integrated spatiotemporal transcriptomic resolution of embryonic palate osteogenesis

Jeremie Douglas Oliver, Resmi Raju, Daniela Marta Roth, Parna Chattaraj, Fahad Karim Kidwai, Fabio Rueda Faucz, James Iben, Apratim Mitra, Kiersten S. Campbell, Gus Fridell, Caroline Esnault, Ryan Dale, Rena N. D’Souza

The paper uses integrated bulk, single-cell, and spatial RNA-seq to uncover the timeline of osteogenic transcriptional programming in embryonic palate development, identifying novel genes and spatial expression patterns involved in palatal fusion.

bioRxiv · Mar 30, 2023 · PreprintDevelopmental Biology