Author

H. Nijveen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Plant Biology· 5 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 5 Assay:bulk RNA-seq· 4 Research Focus:gene regulatory network inference· 4 Organism:Arabidopsis· 3 Organism:plant (other)· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1

Frequent Co-Authors

W. Ligterink· 4 shared B. L. Snoek· 3 shared H. W. M. Hilhorst· 3 shared L. A. J. Willems· 3 shared D. de Ridder· 2 shared M. G. Sterken· 2 shared M. Hartanto· 2 shared M. van Zanten· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersPlant Biology

W. Ligterink

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Modulation of quantitative trait loci for Arabidopsis thaliana seed performance by the maternal and germination environment.

B. L. Snoek, E. A. R. Serin, H. Nijveen, L. A. J. Willems, J. A. Rienstra, M. van Zanten, H. W. M. Hilhorst, W. Ligterink

This study investigates how maternal environment and germination conditions interact to modulate quantitative trait loci (QTLs) affecting seed performance in Arabidopsis thaliana.

bioRxiv · Feb 22, 2023 · PreprintPlant Biology

Prioritizing Candidate eQTL Causal Genes in Arabidopsis using Random Forests

M. Hartanto, A. A. Sani, D. de Ridder, H. Nijveen

This study improves eQTL causal gene prioritization in Arabidopsis using machine learning, achieving high accuracy in identifying potential causal genes.

bioRxiv · Apr 6, 2022Plant Biology

Plasticity of maternal environment dependent expression-QTLs of tomato seeds

M. G. Sterken, H. Nijveen, M. van Zanten, J. Jimenez-Gomez, N. Geshnizjani, L. A. J. Willems, J. Rienstra, H. W. M. Hilhorst, W. Ligterink, B. L. Snoek

The paper identifies expression QTLs in tomato seeds under different maternal nutrient environments, showing how genetic variation affects gene regulation plasticity.

bioRxiv · Mar 29, 2021Plant Biology

Network analysis prioritizes DEWAX and ICE1 as the candidate genes for two major eQTL hotspots in seed germination

M. Hartanto, R. V. L. Joosen, B. L. Snoek, L. A. J. Willems, M. G. Sterken, D. de Ridder, H. W. M. Hilhorst, W. Ligterink, H. Nijveen

The paper identifies DEWAX and ICE1 as key regulatory genes for eQTL hotspots in seed germination through network analysis.

bioRxiv · Apr 29, 2020Plant Biology

Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes

B. O. Oyserman, V. Cordovez, S. W. S. Flores, H. Nijveen, M. H. Medema, J. M. Raaijmakers

The paper expands the traditional GE model to include microbiome interactions (GEM) and demonstrates its application in disentangling contributions to host phenotypes.

bioRxiv · Dec 3, 2019Microbiology

A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

J. M. Farrant, H. Hilhorst, J. Buitink, W. Ligterink, O. Leprince, S. Pelletier, T. Gabaldon, M. E. Schranz, J. Delahaie, I. Julca, M. Marcet-Houben, H. Nijveen, M. Derks, E. Schijlen, T. Zhao, , A. Marques

This study sequenced the genome of Castanospermum australe, a desiccation-sensitive legume, and found that its seeds remain metabolically active and lack mechanisms for desiccation tolerance.

bioRxiv · Jun 10, 2019 · PreprintPlant Biology