Author

W. Ligterink

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 5 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Research Focus:gene regulatory network inference· 4 Organism:plant (other)· 4 Assay:bulk RNA-seq· 3 Organism:Arabidopsis· 2 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

B. L. Snoek· 5 shared H. Nijveen· 4 shared L. A. J. Willems· 4 shared H. W. M. Hilhorst· 3 shared H. Hilhorst· 2 shared M. G. Sterken· 2 shared M. van Zanten· 2 shared N. Geshnizjani· 2 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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5 shared papersPlant Biology

B. L. Snoek

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Author profile →

6 papers

Recent·Most cited

Modulation of quantitative trait loci for Arabidopsis thaliana seed performance by the maternal and germination environment.

B. L. Snoek, E. A. R. Serin, H. Nijveen, L. A. J. Willems, J. A. Rienstra, M. van Zanten, H. W. M. Hilhorst, W. Ligterink

This study investigates how maternal environment and germination conditions interact to modulate quantitative trait loci (QTLs) affecting seed performance in Arabidopsis thaliana.

bioRxiv · Feb 22, 2023 · PreprintPlant Biology

Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

B. O. Oyserman, S. Sarango Flores, T. Griffioen, E. van der Wijk, L. Pronk, W. Lokhorst, A. Nurfikari, N. Stopnisek, A. Kupczok, V. Cordovez, V. J. Carrion, W. Ligterink, B. L. Snoek, M. H. Medema, J. M. Raaijmakers

This study identifies genetic factors influencing rhizosphere microbiome assembly in tomato by linking plant QTLs to microbial gene functions.

bioRxiv · Dec 20, 2021Microbiology

Plasticity of maternal environment dependent expression-QTLs of tomato seeds

M. G. Sterken, H. Nijveen, M. van Zanten, J. Jimenez-Gomez, N. Geshnizjani, L. A. J. Willems, J. Rienstra, H. W. M. Hilhorst, W. Ligterink, B. L. Snoek

The paper identifies expression QTLs in tomato seeds under different maternal nutrient environments, showing how genetic variation affects gene regulation plasticity.

bioRxiv · Mar 29, 2021Plant Biology

Network analysis prioritizes DEWAX and ICE1 as the candidate genes for two major eQTL hotspots in seed germination

M. Hartanto, R. V. L. Joosen, B. L. Snoek, L. A. J. Willems, M. G. Sterken, D. de Ridder, H. W. M. Hilhorst, W. Ligterink, H. Nijveen

The paper identifies DEWAX and ICE1 as key regulatory genes for eQTL hotspots in seed germination through network analysis.

bioRxiv · Apr 29, 2020Plant Biology

A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

J. M. Farrant, H. Hilhorst, J. Buitink, W. Ligterink, O. Leprince, S. Pelletier, T. Gabaldon, M. E. Schranz, J. Delahaie, I. Julca, M. Marcet-Houben, H. Nijveen, M. Derks, E. Schijlen, T. Zhao, , A. Marques

This study sequenced the genome of Castanospermum australe, a desiccation-sensitive legume, and found that its seeds remain metabolically active and lack mechanisms for desiccation tolerance.

bioRxiv · Jun 10, 2019 · PreprintPlant Biology

The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality

N. Geshnizjani, S. Sarikhani Khorami, L. A. J. Willems, B. L. Snoek, H. Hilhorst, W. Ligterink

This study examines how maternal nitrate and phosphate concentrations affect seed and seedling traits in two tomato genotypes, finding significant genotype by environment interactions, especially for nitrate.

bioRxiv · Nov 6, 2018Plant Biology