Author

H. Yamanaka

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 4

Signature Assays, Organisms & Methods

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Research Focus:ecology & biodiversity· 3 Approach:experimental assay· 3 Assay:metagenomics· 3 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Organism:multiple species· 1 Approach:statistical model· 1

Frequent Co-Authors

M. Miya· 2 shared T. Minamoto· 2 shared A. Kato· 1 shared C. Yonashiro· 1 shared G. Ito· 1 shared H. Araki· 1 shared H. Doi· 1 shared H. Murakami· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersEcology

M. Miya

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Advancing marker-gene-based methods for prokaryote-mediated multifunctional redundancy: exploring random and nonrandom extinctions in a watershed

W.-H. Cheng, T. Miki, M. Ido, K. Yoneya, K. Matsui, T. Yokokawa, H. Yamanaka, S.-i. Nakano

The paper refines a marker-gene-based method to quantify multifunctional redundancy in prokaryotic communities by incorporating non-random extinction scenarios and applying it to aquatic ecosystems.

bioRxiv · Mar 14, 2024 · PreprintEcology

Using eDNA metabarcoding to establish targets for freshwater fish composition following river restoration

G. Ito, H. Yamauchi, M. Shigeyoshi, K. Ashino, C. Yonashiro, M. Asami, Y. Goto, J. J. Duda, H. Yamanaka

This study uses eDNA metabarcoding to identify fish community composition and set realistic targets for a river restoration project, finding more species than traditional capture surveys.

bioRxiv · May 26, 2022Ecology

Effects of species traits and ecosystem characteristics on species detection by eDNA metabarcoding in lake fish communities

H. Doi, S. Matsuoka, S.-i. S. Matsuzaki, M. Nagano, H. Sato, H. Yamanaka, S. Matsuhashi, S. Yamamoto, T. Minamoto, H. Araki, K. Ikeda, A. Kato, K. Kumei, N. Maki, T. Mitsuzuka, , M. Miya

This study evaluates how species traits and ecosystem characteristics affect eDNA detection rates in lake fish communities across Japan.

bioRxiv · Sep 25, 2020 · PreprintEcology

Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing

M. Ushio, H. Murakami, R. Masuda, T. Sado, M. Miya, S. Sakurai, H. Yamanaka, T. Minamoto, M. Kondoh

This study quantifies fish eDNA copy numbers using internal standards and high-throughput sequencing, showing strong correlation with qPCR and enabling efficient biodiversity monitoring.

bioRxiv · Dec 7, 2017Ecology