Author

Hongtai Jing

Fairleigh Dickinson University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Sheng Yong XuiD· 2 shared Dong YuaniD· 1 shared Hong-Liang YaniD· 1 shared Lifeng Qiao· 1 shared Peng YeiD· 1 shared Shuang YeiD· 1 shared Shwai He· 1 shared Siqi SuniD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Sheng Yong XuORCID

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2 papers

Recent·Most cited

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models

Yuchen Ren, Zhiyuan Chen, Lifeng Qiao, Hongtai Jing, Y. Cai, Sheng Yong Xu, Peng Ye, Xinzhu Ma, Siqi Sun, Hong-Liang Yan, Dong Yuan, Wanli Ouyang, Xihui Liu

BEACON introduces a comprehensive RNA benchmark to evaluate deep learning models, finding that single nucleotide tokenization and ALiBi improve performance.

bioRxiv · Jun 22, 2024 · PreprintBioinformatics

Accurate Prediction of Antibody Function and Structure Using Bio-Inspired Antibody Language Model

Hongtai Jing, Zhengtao Gao, Sheng Yong Xu, Tao Shen, Zhangzhi Peng, Shwai He, Tao You, Shuang Ye, Wei Lin, Siqi Sun

The paper introduces BALM, a bio-inspired antibody language model, and BALMFold, a method for predicting antibody structures, outperforming existing models in benchmark tests.

bioRxiv · Aug 30, 2023 · PreprintBioinformatics