Sheng Yong Xu

RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment

RTM-align improves RNA structure alignment by addressing size dependency and short fragment handling, outperforming existing tools in accuracy and reliability.

FoldBench: An All-atom Benchmark for Biomolecular Structure Prediction

FoldBench evaluates all-atom biomolecular structure prediction models across nine tasks, revealing performance gaps and highlighting AlphaFold 3's superiority.

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models

BEACON introduces a comprehensive RNA benchmark to evaluate deep learning models, finding that single nucleotide tokenization and ALiBi improve performance.

Accurate Prediction of Antibody Function and Structure Using Bio-Inspired Antibody Language Model

The paper introduces BALM, a bio-inspired antibody language model, and BALMFold, a method for predicting antibody structures, outperforming existing models in benchmark tests.

AcrNET: Predicting Anti-CRISPR with Deep Learning

AcrNET predicts anti-CRISPR proteins using a deep learning model, achieving significant performance improvements and class-level predictions.