Tao Shen

RTM-align improves RNA structure alignment by addressing size dependency and short fragment handling, outperforming existing tools in accuracy and reliability.

FoldBench evaluates all-atom biomolecular structure prediction models across nine tasks, revealing performance gaps and highlighting AlphaFold 3's superiority.

The paper introduces BALM, a bio-inspired antibody language model, and BALMFold, a method for predicting antibody structures, outperforming existing models in benchmark tests.

A BERT-style model pretrained on 23.7 million unlabelled ncRNA sequences gives embeddings that improve secondary structure, contact, distance-map and some function predictions over task-specific and MSA-based baselines.