Author

Ikenna Anigbogu

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A Blocker· 1 shared Adam J. LittermaniD· 1 shared Angie S. HinrichsiD· 1 shared Ann C Huang· 1 shared Ashton TengiD· 1 shared Auston Marm KilpatrickiD· 1 shared Beth ShapiroiD· 1 shared Bryan P. ThornlowiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

A Blocker

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Author profile →

2 papers

Recent·Most cited

X-Atlas/Orion: Genome-wide Perturb-seq Datasets via a Scalable Fix-Cryopreserve Platform for Training Dose-Dependent Biological Foundation Models

Ann C Huang, Tsung-Han S. Hsieh, Jiang Zhu, Jackson Michuda, Ashton Teng, Soohong Kim, Elizabeth M Rumsey, Sharon K Lam, Ikenna Anigbogu, Philip Wright, Mohamed Ameen, Kwontae You, Christopher J Graves, Hyunsung John Kim, Adam J. Litterman, , Ci Chu

The paper introduces a scalable Perturb-seq platform called FiCS Perturb-seq and releases X-Atlas/Orion, a large Perturb-seq atlas, to improve foundation model development through dose-dependent genetic effects.

bioRxiv · Jun 11, 2025 · PreprintGenomics

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

Bryan P. Thornlow, Angie S. Hinrichs, Miten Jain, Namrita Dhillon, Scott La, Joshua D. Kapp, Ikenna Anigbogu, Molly Cassatt‐Johnstone, Jakob McBroome, Maximilian Haeussler, Yatish Turakhia, Terren R. Chang, Hugh E. Olsen, Jeremy R. Sanford, Michael D. Stone, , Russell B Corbett-Detig

The paper reports a SARS-CoV-2 lineage with mutations from known variants of concern that is rejected by sequence repositories due to a deletion, suggesting underestimation of its frequency.

bioRxiv · Apr 5, 2021 · PreprintGenomics