ProbeST: a custom probe design pipeline for Spatial Transcriptomics
Sofia Rouot, Ireen van Dolderen, Patrick Rosendahl Andreassen, Solène Frapard, Sybil A. Herrera-Foessel, Hailey Sounart, Sami Saarenpää, Julia A. Vorholt, Stefania Giacomello
ProbeST designs custom probe sets for spatial transcriptomics, validated on mouse enteroids infected with Salmonella, enabling detection of host and pathogen transcripts.
bioRxiv · Aug 29, 2025 · PreprintBioinformatics