Author

Sofia Rouot

Science for Life LaboratoryORCID 0009-0001-9447-6418Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 1 Organism:mouse· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Hailey SounartiD· 1 shared Ireen van Dolderen· 1 shared Julia A. VorholtiD· 1 shared Patrick Rosendahl AndreasseniD· 1 shared Sami SaarenpääiD· 1 shared Solène FrapardiD· 1 shared Stefania GiacomelloiD· 1 shared Sybil A. Herrera-Foessel· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Hailey SounartORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintAug 29, 2025

ProbeST: a custom probe design pipeline for Spatial Transcriptomics

Sofia Rouot, Ireen van Dolderen, Patrick Rosendahl Andreassen…·Stefania Giacomello

ProbeST designs custom probe sets for spatial transcriptomics, validated on mouse enteroids infected with Salmonella, enabling detection of host and pathogen transcripts.

DOI 10.1101/2025.08.29.673037

mousespatial transcriptomics

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