Author

J. Almario

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Organism:plant (other)· 1

Frequent Co-Authors

E. Kemen· 3 shared A. Mari· 2 shared M. Mahmoudi· 2 shared A. Placzek· 1 shared C. Friedemann· 1 shared D. Heavens· 1 shared D. S. Lundberg· 1 shared D. Weigel· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersMicrobiology

E. Kemen

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4 papers

Recent·Most cited

Microbial communities living inside plant leaves or on the leaf surface are differently shaped by environmental cues

M. Mahmoudi, J. Almario, K. Lutap, K. Nieselt, E. Kemen

This study investigates how environmental cues shape microbial communities inside and on the surface of Arabidopsis leaves over five years, identifying key drivers and niche preferences.

ISME Communications · Aug 8, 2024Peer-reviewedMicrobiology

Life on leaves : uncovering temporal dynamics in Arabidopsis' leaf microbiota

J. Almario, M. Mahmoudi, S. Kroll, M. Agler, A. Placzek, A. Mari, E. Kemen

This study examines temporal dynamics in Arabidopsis thaliana leaf microbiota over three years, identifying core taxa and time-varying microbial networks.

bioRxiv · Jul 6, 2021 · PreprintMicrobiology

Obtaining deeper insights into microbiome diversity using a simple method to block host and non-targets in amplicon sequencing

T. Mayer, A. Mari, J. Almario, M. Murillo-Roos, M. Abdullah, N. Dombrowski, S. Hacquard, E. M. Kemen, M. T. Agler

The paper introduces blocking oligos and an R package to reduce non-target DNA amplification in amplicon sequencing, improving microbial diversity analysis in plant systems.

bioRxiv · Oct 5, 2020Microbiology

Stability of association between Arabidopsis thaliana and Pseudomonas pathogens over evolutionary time scales

T. L. Karasov, J. Almario, C. Friedemann, W. Ding, M. Giolai, D. Heavens, S. Kersten, D. S. Lundberg, M. Neumann, J. Regalado, R. A. Neher, E. Kemen, D. Weigel

The paper surveys Pseudomonas in Arabidopsis thaliana over multiple years and sites, finding that pathogenic sublineages coexist without a single dominant strain overtaking populations.

bioRxiv · Jan 30, 2018Microbiology